Brenneria corticis sp. nov., isolated from symptomatic bark of Populus×euramericana canker.
Identifieur interne : 000A99 ( Main/Exploration ); précédent : 000A98; suivant : 000B00Brenneria corticis sp. nov., isolated from symptomatic bark of Populus×euramericana canker.
Auteurs : Yong Li [République populaire de Chine] ; Ming-Hui Zheng [République populaire de Chine] ; Hai-Ming Wang [République populaire de Chine] ; Cai-Li Lin [République populaire de Chine] ; Xi-Zhuo Wang [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2019.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Enterobacteriaceae (classification), Enterobacteriaceae (isolement et purification), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Écorce (microbiologie).
- MESH :
- composition chimique : Acides gras, Enterobacteriaceae.
- génétique : ADN bactérien, ARN ribosomique 16S.
- isolement et purification : Enterobacteriaceae.
- microbiologie : Maladies des plantes, Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Phylogenèse, Techniques de typage bactérien.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Enterobacteriaceae (classification), Enterobacteriaceae (isolation & purification), Fatty Acids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Plant Diseases (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , chemistry : Fatty Acids.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- geographic : China.
- classification : Enterobacteriaceae.
- isolation & purification : Enterobacteriaceae.
- microbiology : Plant Bark, Plant Diseases, Populus.
- Bacterial Typing Techniques, Base Composition, Phylogeny, Sequence Analysis, DNA.
Abstract
A Gram-stain-negative, facultatively anaerobic, motile bacterial strain, designated gBX10-1-2T, was isolated from symptomatic bark of Populus×euramericana canker in China. Phylogenetic analysis based on its 16S rRNA gene sequence showed that the novel isolate belonged to the genus Brenneria, and shared the highest sequence similarity to Brenneria nigrifluens LMG 2694T (98.3 %). In the phylogenetic trees based on the four housekeeping genes sequences, the novel strain formed a separate branch different from B. nigrifluens LMG 2694T, indicating that the novel strain should be classified as a novel species. The genome sequence-derived average nucleotide identity (ANI) values between the novel isolate and B. nigrifluens LMG 2694T, Brenneria roseaesubsp. roseae FRB 222T and Brenneria roseaesubsp. americana FRB 223T were less than 85 %, lower than the proposed species boundary ANI cut-off value (95-96 %). The DNA G+C content was 56.2 mol%, and the main fatty acids were C16 : 0, C16 : 1ω7c, C18 : 1ω7c and C17 : 0cyclo. Based on the phenotypic and genotypic characteristics, strain gBX10-1-2T represents a novel species of genus Brenneria, for which the name Brenneria corticis sp. nov. is proposed. The type strain is gBX10-1-2T (=CFCC 11842T=KCTC 42840T).
DOI: 10.1099/ijsem.0.003077
PubMed: 30403583
Affiliations:
Links toward previous steps (curation, corpus...)
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evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacterial Typing Techniques (MeSH)</term><term>Base Composition (MeSH)</term><term>China (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>Enterobacteriaceae (classification)</term><term>Enterobacteriaceae (isolation & purification)</term><term>Fatty Acids (chemistry)</term><term>Phylogeny (MeSH)</term><term>Plant Bark (microbiology)</term><term>Plant Diseases (microbiology)</term><term>Populus (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Acides gras (composition chimique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chine 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qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ARN ribosomique 16S</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Enterobacteriaceae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Enterobacteriaceae</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Populus</term><term>Écorce</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term><term>Plant Diseases</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Chine</term><term>Composition en bases nucléiques</term><term>Phylogenèse</term><term>Techniques de typage bactérien</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A Gram-stain-negative, facultatively anaerobic, motile bacterial strain, designated gBX10-1-2<sup>T</sup>, was isolated from symptomatic bark of Populus×euramericana canker in China. Phylogenetic analysis based on its 16S rRNA gene sequence showed that the novel isolate belonged to the genus Brenneria, and shared the highest sequence similarity to Brenneria nigrifluens LMG 2694<sup>T</sup> (98.3 %). In the phylogenetic trees based on the four housekeeping genes sequences, the novel strain formed a separate branch different from B. nigrifluens LMG 2694<sup>T</sup>, indicating that the novel strain should be classified as a novel species. The genome sequence-derived average nucleotide identity (ANI) values between the novel isolate and B. nigrifluens LMG 2694<sup>T</sup>, Brenneria roseaesubsp. roseae FRB 222<sup>T</sup> and Brenneria roseaesubsp. americana FRB 223<sup>T</sup> were less than 85 %, lower than the proposed species boundary ANI cut-off value (95-96 %). The DNA G+C content was 56.2 mol%, and the main fatty acids were C16 : 0, C16 : 1ω7c, C18 : 1ω7c and C17 : 0cyclo. Based on the phenotypic and genotypic characteristics, strain gBX10-1-2<sup>T</sup> represents a novel species of genus Brenneria, for which the name Brenneria corticis sp. nov. is proposed. The type strain is gBX10-1-2<sup>T</sup> (=CFCC 11842<sup>T</sup>=KCTC 42840<sup>T</sup>).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30403583</PMID><DateCompleted><Year>2019</Year><Month>03</Month><Day>15</Day></DateCompleted><DateRevised><Year>2019</Year><Month>03</Month><Day>15</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><Volume>69</Volume><Issue>1</Issue><PubDate><Year>2019</Year><Month>Jan</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle>Brenneria corticis sp. nov., isolated from symptomatic bark of Populus×euramericana canker.</ArticleTitle><Pagination><MedlinePgn>63-67</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.003077</ELocationID><Abstract><AbstractText>A Gram-stain-negative, facultatively anaerobic, motile bacterial strain, designated gBX10-1-2<sup>T</sup>, was isolated from symptomatic bark of Populus×euramericana canker in China. Phylogenetic analysis based on its 16S rRNA gene sequence showed that the novel isolate belonged to the genus Brenneria, and shared the highest sequence similarity to Brenneria nigrifluens LMG 2694<sup>T</sup> (98.3 %). In the phylogenetic trees based on the four housekeeping genes sequences, the novel strain formed a separate branch different from B. nigrifluens LMG 2694<sup>T</sup>, indicating that the novel strain should be classified as a novel species. The genome sequence-derived average nucleotide identity (ANI) values between the novel isolate and B. nigrifluens LMG 2694<sup>T</sup>, Brenneria roseaesubsp. roseae FRB 222<sup>T</sup> and Brenneria roseaesubsp. americana FRB 223<sup>T</sup> were less than 85 %, lower than the proposed species boundary ANI cut-off value (95-96 %). The DNA G+C content was 56.2 mol%, and the main fatty acids were C16 : 0, C16 : 1ω7c, C18 : 1ω7c and C17 : 0cyclo. Based on the phenotypic and genotypic characteristics, strain gBX10-1-2<sup>T</sup> represents a novel species of genus Brenneria, for which the name Brenneria corticis sp. nov. is proposed. The type strain is gBX10-1-2<sup>T</sup> (=CFCC 11842<sup>T</sup>=KCTC 42840<sup>T</sup>).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Ming-Hui</ForeName><Initials>MH</Initials><AffiliationInfo><Affiliation>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Hai-Ming</ForeName><Initials>HM</Initials><AffiliationInfo><Affiliation>2Forest Protection Station of Heze, Heze, Shandong province, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lin</LastName><ForeName>Cai-Li</ForeName><Initials>CL</Initials><AffiliationInfo><Affiliation>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Xi-Zhuo</ForeName><Initials>XZ</Initials><AffiliationInfo><Affiliation>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>11</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004755" MajorTopicYN="N">Enterobacteriaceae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">average nucleotide identity</Keyword><Keyword MajorTopicYN="N">new taxon</Keyword><Keyword MajorTopicYN="N">poplar</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>11</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>3</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>11</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30403583</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.003077</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name></noRegion><name sortKey="Lin, Cai Li" sort="Lin, Cai Li" uniqKey="Lin C" first="Cai-Li" last="Lin">Cai-Li Lin</name><name sortKey="Wang, Hai Ming" sort="Wang, Hai Ming" uniqKey="Wang H" first="Hai-Ming" last="Wang">Hai-Ming Wang</name><name sortKey="Wang, Xi Zhuo" sort="Wang, Xi Zhuo" uniqKey="Wang X" first="Xi-Zhuo" last="Wang">Xi-Zhuo Wang</name><name sortKey="Zheng, Ming Hui" sort="Zheng, Ming Hui" uniqKey="Zheng M" first="Ming-Hui" last="Zheng">Ming-Hui Zheng</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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